SMTL ID : 5vjk.1

Crystal structure of H7 hemagglutinin mutant (V186K, K193T, G228S) from the influenza virus A/Shanghai/2/2013 (H7N9)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: R.295 Chain B: E.69, E.72, K.75, G.78, N.79, N.82 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:E.69 NAG-NAG-BMA.4: 7 residues within 4Å: Chain C: R.295 Chain D: E.69, E.72, K.75, G.78, N.79, N.82 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:E.69 NAG-NAG-BMA.7: 7 residues within 4Å: Chain E: R.295 Chain F: E.69, E.72, K.75, G.78, N.79, N.82 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:E.69

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.235 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.235 NAG.3: 4 residues within 4Å: Chain A: N.32, T.34, T.313 Chain B: L.52 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.32, A:T.313 NAG.5: 1 residues within 4Å: Chain C: N.235 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.235 NAG.6: 4 residues within 4Å: Chain C: N.32, T.34, T.313 Chain D: L.52 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.32, C:T.313 NAG.8: 1 residues within 4Å: Chain E: N.235 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.235 NAG.9: 4 residues within 4Å: Chain E: N.32, T.34, T.313 Chain F: L.52 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.32, E:T.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Vries, R.P. et al., Three mutations switch H7N9 influenza to human-type receptor specificity. PLoS Pathog. (2017)

Release Date

2017-05-24

Peptides

Hemagglutinin HA1: ACE
Hemagglutinin HA2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

Hemagglutinin HA1

Hemagglutinin HA2

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