SMTL ID : 5vjy.2 (2 other biounits)

Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.1: 11 residues within 4Å: Chain A: L.54, V.71, A.87, G.88, V.89, V.90, Y.94, N.97, L.98, G.99 Chain C: S.75 12 PLIP interactions: 10 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:G.88, A:V.89, A:V.89, A:Y.94, A:N.97, A:G.99, C:S.75 Water bridges: A:V.89, A:Y.94, A:G.99, A:L.101, C:S.75 BTB.2: 10 residues within 4Å: Chain A: S.75 Chain B: V.71, A.87, G.88, V.89, V.90, Y.94, N.97, L.98, G.99 11 PLIP interactions: 8 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:G.88, B:V.89, B:V.89, B:N.97, B:G.99, A:S.75 Water bridges: B:Y.94, B:G.99, B:L.101, A:S.75, A:S.75 BTB.3: 11 residues within 4Å: Chain B: S.75 Chain C: L.54, V.71, A.87, G.88, V.89, V.90, Y.94, N.97, L.98, G.99 12 PLIP interactions: 10 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:G.88, C:V.89, C:V.89, C:Y.94, C:N.97, C:N.97, C:G.99, B:S.75 Water bridges: C:V.89, C:G.99, C:L.101, B:S.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Delker, S.L. et al., Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri. to be published

Release Date

2017-05-03

Peptides

dUTP pyrophosphatase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

dUTP pyrophosphatase

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