SMTL ID : 6mjk.1

Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri in complex with deoxyuridine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 1 residues within 4Å: Ligands: PPV.4 No protein-ligand interaction detected (PLIP) MG.2: 1 residues within 4Å: Chain A: D.84 No protein-ligand interaction detected (PLIP)

1 x DUR: 2'-DEOXYURIDINE(Non-covalent)

DUR.3: 10 residues within 4Å: Chain A: A.87, G.88, V.89, V.90, D.91, Y.94, N.97, L.98, G.99 Ligands: PPV.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.87, A:Y.94 Hydrogen bonds: A:G.88, A:D.91, A:D.91, A:Y.94, A:G.99, A:G.99

1 x PPV: PYROPHOSPHATE(Non-functional Binders)

PPV.4: 2 residues within 4Å: Ligands: MG.1, DUR.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Delker, S.L. et al., Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri in complex with deoxyuridine. to be published

Release Date

2018-10-31

Peptides

dUTP pyrophosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

dUTP pyrophosphatase

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