SMTL ID : 5vlk.1

Short PCSK9 delta-P' complex with shrunken peptide bearing homo-Arginine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: P.331, V.333, D.360 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:P.331, A:V.333, A:D.360, H2O.2, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Discovery of a cryptic peptide-binding site on PCSK9 and design of antagonists. Nat. Struct. Mol. Biol. (2017)

Release Date

2017-08-16

Peptides

Proprotein convertase subtilisin/kexin type 9: A
ACE-THR-VAL-PHE-THR-SER-TRP-GLU-GLU-TYR-LEU-ASP-TRP-VAL-NH2 peptide: B
ACE-TRP-ASN-LEU-VAL-HRG-ILE-GLY-LEU-LEU peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
Y

C
Z

Proprotein convertase subtilisin/kexin type 9

ACE-THR-VAL-PHE-THR-SER-TRP-GLU-GLU-TYR-LEU-ASP-TRP-VAL-NH2 peptide

ACE-TRP-ASN-LEU-VAL-HRG-ILE-GLY-LEU-LEU peptide

Related Entries With Identical Sequence