SMTL ID : 5vnd.1 (2 other biounits)

Crystal structure of FGFR1-Y563C (FGFR4 surrogate) covalently bound to H3B-6527

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 9ES: N-{2-[(6-{[(2,6-dichloro-3,5-dimethoxyphenyl)carbamoyl](methyl)amino}pyrimidin-4-yl)amino]-5-(4-ethylpiperazin-1-yl)phenyl}propanamide(Covalent)

9ES.1: 20 residues within 4Å: Chain A: L.28, V.36, L.38, A.56, K.58, E.75, M.79, I.89, V.103, V.105, E.106, C.107, A.108, G.111, E.115, L.174, A.184, D.185, F.186 Ligands: EDO.6 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.28, A:L.38, A:L.174 Hydrogen bonds: A:A.108, A:A.108, A:D.185, A:D.185 Water bridges: A:K.58 Salt bridges: A:E.115

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: S.128, Y.129 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.129 Water bridges: A:N.130 SO4.3: 6 residues within 4Å: Chain A: R.114, R.171, T.201, N.203, R.205, W.210 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.201, A:N.203 Water bridges: A:R.171, A:N.203 Salt bridges: A:R.114, A:R.171, A:R.205

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: W.228, Y.245, R.262, M.263, W.281 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.228, A:Y.245, A:M.263 EDO.5: 5 residues within 4Å: Chain A: A.159, H.223, T.290, F.291, K.292 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.291, A:K.292 Water bridges: A:H.223, A:T.290 EDO.6: 5 residues within 4Å: Chain A: R.171, N.172, L.174, D.185 Ligands: 9ES.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.171 EDO.7: 3 residues within 4Å: Chain A: R.121, G.242, S.243 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.121, A:R.121, A:S.243 Water bridges: A:R.205, A:S.243, A:S.243 EDO.8: 3 residues within 4Å: Chain A: T.270, N.271, E.272 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.271, A:E.272 EDO.9: 2 residues within 4Å: Chain A: K.86, R.153 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.153 EDO.10: 4 residues within 4Å: Chain A: K.209, S.243, G.247, V.248 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.243, A:G.247, A:V.248, A:V.248 Water bridges: A:K.209, A:S.243 EDO.11: 3 residues within 4Å: Chain A: P.289, T.290, Q.293 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.290 EDO.12: 4 residues within 4Å: Chain A: E.252, K.255, L.256, E.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joshi, J.J. et al., H3B-6527 Is a Potent and Selective Inhibitor of FGFR4 in FGF19-Driven Hepatocellular Carcinoma. Cancer Res. (2017)

Release Date

2017-05-24

Peptides

Fibroblast growth factor receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fibroblast growth factor receptor 1

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