SMTL ID : 5vns.1

M.tb Antigen 85C Acyl-Enzyme Intermediate with Tetrahydrolipstatin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x DH9: (2S,3S,5S)-5-[(N-FORMYL-L-LEUCYL)OXY]-2-HEXYL-3-HYDROXYHEXADECANOIC ACID(Covalent)

DH9.1: 16 residues within 4Å: Chain A: G.40, L.41, F.77, S.125, M.126, S.149, F.151, L.162, I.163, A.166, T.214, L.228, E.229, H.261, W.266 Ligands: GOL.5 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.41, A:F.77, A:F.151, A:F.151, A:F.151, A:L.162, A:I.163, A:A.166, A:L.228, A:W.266 Hydrogen bonds: A:L.41, A:M.126, A:E.229, A:E.229

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 8 residues within 4Å: Chain A: F.27, G.29, G.30, G.31, P.32, S.66, K.112, G.113 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.27 Hydrogen bonds: A:G.31 MPD.3: 3 residues within 4Å: Chain A: G.157, W.158, W.159 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.158, A:W.158, A:W.159 Hydrogen bonds: A:W.158

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: D.39, Q.44, G.49, I.52, N.53, W.263 Ligands: GOL.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.39, A:G.40, A:N.53, A:N.53 GOL.5: 6 residues within 4Å: Chain A: G.40, L.41, R.42, W.263 Ligands: DH9.1, GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.40, A:G.40, A:R.42, A:W.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goins, C.M. et al., Mycolyltransferase fromMycobacterium tuberculosisin covalent complex with tetrahydrolipstatin provides insights into antigen 85 catalysis. J. Biol. Chem. (2018)

Release Date

2018-01-24

Peptides

Diacylglycerol acyltransferase/mycolyltransferase Ag85C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Diacylglycerol acyltransferase/mycolyltransferase Ag85C

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