SMTL ID : 5vnv.1

Crystal structure of Nb.b201

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

3 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 3 residues within 4Å: Chain A: Y.103, S.104, R.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.106, A:R.106 1PE.2: 2 residues within 4Å: Chain A: Y.58 Ligands: 1PE.3 No protein-ligand interaction detected (PLIP) 1PE.3: 1 residues within 4Å: Ligands: 1PE.2 No protein-ligand interaction detected (PLIP)

4 x K: POTASSIUM ION(Non-covalent)

K.4: 5 residues within 4Å: Chain A: Y.27, I.28, D.30, N.73, N.76 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:I.28, A:N.73, H2O.2, H2O.3 K.5: 2 residues within 4Å: Chain A: T.57 Ligands: FMT.8 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.57, H2O.3 K.6: 2 residues within 4Å: Chain A: Q.13, E.120 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.120 K.7: 3 residues within 4Å: Chain A: H.53, T.55, N.56 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.53, A:T.55, H2O.5

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.8: 4 residues within 4Å: Chain A: Y.58, Y.59, K.64 Ligands: K.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.59, A:K.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McMahon, C. et al., Yeast surface display platform for rapid discovery of conformationally selective nanobodies. Nat. Struct. Mol. Biol. (2018)

Release Date

2018-02-21

Peptides

Nb.b201: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nb.b201

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