SMTL ID : 5vnw.2 (1 other biounit)

Crystal structure of Nb.b201 bound to human serum albumin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 12 residues within 4Å: Chain A: E.153, Q.196, R.218, L.219, L.238, V.241, H.242, C.245, R.257, L.260, I.290, A.291 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.218, A:V.241, A:R.257, A:L.260, A:I.290 Hydrogen bonds: A:Q.196

1 x BUA: butanoic acid(Non-covalent)

BUA.2: 6 residues within 4Å: Chain A: S.342, V.344, R.348, I.388, L.453, R.485 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.388, A:L.453 Hydrogen bonds: A:S.342 Salt bridges: A:R.348, A:R.485

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain B: G.54, T.55, N.56 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.55, B:T.55, B:N.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McMahon, C. et al., Yeast surface display platform for rapid discovery of conformationally selective nanobodies. Nat. Struct. Mol. Biol. (2018)

Release Date

2018-02-21

Peptides

Serum albumin: A
Nb.b201: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Serum albumin

Nb.b201

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