SMTL ID : 5voe.1

DesGla-XaS195A Bound to Aptamer 11F7t

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: Y.173, D.174, A.210, R.211, K.214 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.214, A:K.214 Water bridges: A:Y.173, A:R.211

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.56, N.58, Q.61, E.62, E.66 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.66

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 3 residues within 4Å: Chain C: A.10, C.22, U.23 3 PLIP interactions: 2 Ligand-Water interactions, 1 interactions with chain C Metal complexes: H2O.5, H2O.6, C:C.22 MG.4: 4 residues within 4Å: Chain C: C.9, A.10, U.24, G.25 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gunaratne, R. et al., Combination of aptamer and drug for reversible anticoagulation in cardiopulmonary bypass. Nat. Biotechnol. (2018)

Release Date

2018-06-20

Peptides

Coagulation factor X: A
Coagulation factor X: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Coagulation factor X

Coagulation factor X

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