SMTL ID : 3liw.1

Factor XA in complex with (R)-2-(1-ADAMANTYLCARBAMOYLAMINO)-3-(3-CARBAMIDOYL-PHENYL)-N-PHENETHYL-PROPIONIC ACID AMIDE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.56, N.58, Q.61, E.62, E.63, E.66 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.66, H2O.2 CA.2: 5 residues within 4Å: Chain A: Y.173, D.174, T.175, R.211, K.214 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.173, A:D.174, A:R.211, A:K.214, H2O.4

1 x RUP: (R)-2-(3-ADAMANTAN-1-YL-UREIDO)-3-(3-CARBAMIMIDOYL-PHENYL)-N-PHENETHYL-PROPIONAMIDE(Non-covalent)

RUP.3: 16 residues within 4Å: Chain A: E.83, T.84, Y.85, R.132, E.135, F.162, D.179, A.180, C.181, Q.182, S.185, W.205, G.206, G.208, C.209, G.216 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.85, A:E.135, A:F.162, A:Q.182, A:W.205 Hydrogen bonds: A:A.180, A:G.206, A:G.206, A:G.206, A:G.208 Water bridges: A:G.208, A:I.217, A:Y.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller, M.M. et al., (R)-3-Amidinophenylalanine-Derived Inhibitors of Factor Xa with a Novel Active-Site Binding Mode. Biol.Chem. (2003)

Release Date

2010-04-07

Peptides

Activated factor Xa heavy chain: A
Factor X light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Activated factor Xa heavy chain

Factor X light chain

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