SMTL ID : 5vpe.2 (1 other biounit)

Transcription factor FosB/JunD bZIP domain in complex with cognate DNA, type-I crystal

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: E.5, K.6, R.8, V.9 No protein-ligand interaction detected (PLIP) EDO.2: 4 residues within 4Å: Chain A: K.43, E.47 Chain B: Q.42 Ligands: EDO.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.43 EDO.3: 6 residues within 4Å: Chain A: E.40, K.43 Chain B: K.35, L.39, Q.42 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.40, A:K.43 EDO.4: 3 residues within 4Å: Chain B: S.1, Q.2, E.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.3 EDO.5: 5 residues within 4Å: Chain B: R.15, S.19, R.22 Chain C: A.9, C.10 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.19, B:R.22 Water bridges: B:R.15, B:S.19, B:S.19 EDO.6: 2 residues within 4Å: Chain B: S.1, R.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.1 EDO.7: 4 residues within 4Å: Chain B: S.30, E.33, E.34, K.37 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.34, B:K.37

1 x NA: SODIUM ION(Non-functional Binders)

NA.8: 2 residues within 4Å: Chain B: R.11 Chain C: T.11 No protein-ligand interaction detected (PLIP)

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.9: 8 residues within 4Å: Chain A: R.22 Chain B: A.18, C.21, R.22, K.25 Chain D: T.7, G.8, A.9 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, Z. et al., Activator Protein-1: redox switch controlling structure and DNA-binding. Nucleic Acids Res. (2017)

Release Date

2017-09-06

Peptides

Protein fosB: A
Transcription factor jun-D: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein fosB

Transcription factor jun-D

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