SMTL ID : 5vpf.1 (1 other biounit)

Transcription factor FosB/JunD bZIP domain in complex with cognate DNA, type-II crystal

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

hetero-1-1-mer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: R.22, R.25 Chain B: R.22, K.25 Chain C: C.10 Chain D: G.8, A.9, G.10 Ligands: EDO.9 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.22, A:R.22, B:K.25 EDO.2: 6 residues within 4Å: Chain A: E.40, K.43 Chain B: K.35, T.38, L.39, Q.42 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.35, A:E.40, A:K.43 EDO.3: 5 residues within 4Å: Chain A: Q.33, D.37, E.40 Chain B: L.32, K.35 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.33 Water bridges: A:Q.33 EDO.5: 3 residues within 4Å: Chain B: R.15, I.16, S.19 2 PLIP interactions: 2 interactions with chain B Water bridges: B:S.19, B:S.19 EDO.8: 3 residues within 4Å: Chain C: G.16, A.17, C.18 No protein-ligand interaction detected (PLIP) EDO.9: 12 residues within 4Å: Chain B: N.14, A.18, C.21, R.22, K.25 Chain C: C.10, T.11, C.12 Chain D: T.7, G.8, A.9 Ligands: EDO.1 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.25

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: R.10, R.13 Chain C: C.4, G.5 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain B: N.14, A.17 Chain D: G.5, G.6, T.7 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 1 residues within 4Å: Chain B: S.19 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, Z. et al., Activator Protein-1: redox switch controlling structure and DNA-binding. Nucleic Acids Res. (2017)

Release Date

2017-09-06

Peptides

Protein fosB: A
Transcription factor jun-D: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein fosB

Transcription factor jun-D

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