SMTL ID : 5vrk.1

Crystal structure of SsoPox AsA6 mutant (F46L-C258A-W263M-I280T) - open form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x FE2: FE (II) ION(Non-covalent)

FE2.1: 6 residues within 4Å: Chain A: H.22, H.24, K.137, D.256 Ligands: CO.2, EDO.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.22, A:H.24, A:D.256, H2O.1 FE2.8: 6 residues within 4Å: Chain B: H.22, H.24, K.137, D.256 Ligands: CO.9, EDO.15 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.22, B:H.24, B:D.256, H2O.13

2 x CO: COBALT (II) ION(Non-covalent)

CO.2: 6 residues within 4Å: Chain A: K.137, H.170, H.199, R.223 Ligands: FE2.1, EDO.7 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.170, A:H.199, H2O.1 CO.9: 6 residues within 4Å: Chain B: K.137, H.170, H.199, R.223 Ligands: FE2.8, EDO.15 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.170, B:H.199, H2O.13

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: N.160, K.161, K.164, G.189, V.190, D.191, K.194 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.160, A:K.164, A:G.189, A:D.191 Water bridges: A:G.189 GOL.5: 8 residues within 4Å: Chain A: S.171, N.172, A.173, H.174, H.199, D.202, R.223, F.229 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.173, A:H.199, A:D.202, A:R.223 Water bridges: A:H.174 GOL.6: 3 residues within 4Å: Chain A: R.77, E.80, T.129 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.77, A:E.80 GOL.10: 8 residues within 4Å: Chain B: S.171, N.172, A.173, H.174, H.199, D.202, R.223, F.229 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.172, B:A.173, B:H.174, B:H.199, B:D.202, B:R.223 GOL.12: 7 residues within 4Å: Chain A: Y.105 Chain B: L.39, Y.40, E.45, T.260, I.261, D.262 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.45 Water bridges: A:R.109 GOL.13: 5 residues within 4Å: Chain B: A.213, D.214, Y.247, D.249, K.250 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.213, B:D.249 GOL.14: 6 residues within 4Å: Chain B: N.160, K.164, G.189, V.190, D.191, K.194 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.160, B:K.164, B:D.191 Water bridges: B:G.189

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: K.161, E.162, K.164 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.162, A:K.164, A:K.164 EDO.7: 9 residues within 4Å: Chain A: H.24, L.72, Y.97, K.137, H.170, R.223, D.256 Ligands: FE2.1, CO.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.97, A:R.223 Water bridges: A:D.256 EDO.11: 5 residues within 4Å: Chain B: A.173, H.174, N.175, N.176, Y.208 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.173, B:N.176, B:N.205 EDO.15: 9 residues within 4Å: Chain B: H.24, L.72, Y.97, K.137, H.170, R.223, D.256 Ligands: FE2.8, CO.9 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.97, B:Y.97, B:R.223 Water bridges: B:D.256

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jacquet, P. et al., Rational engineering of a native hyperthermostable lactonase into a broad spectrum phosphotriesterase. Sci Rep (2017)

Release Date

2018-01-10

Peptides

Aryldialkylphosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aryldialkylphosphatase

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