SMTL ID : 5vsj.1

Sco GlgEI-V279S in complex with a pyrolidene-based ethyl-phosphonate compound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

homo-dimer

Ligands

2 x 9HV: {2-[(2R,3R,4R,5R)-3-(alpha-D-glucopyranosyloxy)-4-hydroxy-2,5-bis(hydroxymethyl)pyrrolidin-1-yl]ethyl}phosphonic acid(Non-covalent)

9HV.1: 16 residues within 4Å: Chain A: K.264, N.268, S.279, W.281, Q.324, K.355, Y.357, D.359, I.360, R.392, D.394, N.395, E.423, D.480, K.534, Y.535 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.268, A:S.279, A:Q.324, A:Q.324, A:K.355, A:Y.357, A:D.359, A:R.392, A:R.392, A:D.480, A:Y.535 Salt bridges: A:D.394, A:E.423, A:D.480, A:K.534 9HV.3: 17 residues within 4Å: Chain B: K.264, N.268, S.279, W.281, A.282, Q.324, K.355, Y.357, D.359, I.360, R.392, D.394, N.395, E.423, D.480, K.534, Y.535 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:K.264, B:S.279, B:Q.324, B:Q.324, B:K.355, B:D.359, B:R.392, B:R.392, B:D.480, B:D.480, B:D.480, B:D.480 Water bridges: B:K.264, B:N.268, B:D.480 Salt bridges: B:D.394, B:E.423, B:D.480

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 5 residues within 4Å: Chain B: Y.639, Y.646, V.647, R.648, H.657 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.648, B:H.657

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Veleti, S.K. et al., Zwitterionic pyrrolidene-phosphonates: inhibitors of the glycoside hydrolase-like phosphorylase Streptomyces coelicolor GlgEI-V279S. Org. Biomol. Chem. (2017)

Release Date

2017-05-31

Peptides

Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1

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