SMTL ID : 5vt2.1

Crystal structure of growth differentiation factor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: A.55, N.56 Chain B: D.103 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.103, A:N.56 EDO.2: 2 residues within 4Å: Chain A: V.39, Q.40 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.40 EDO.3: 5 residues within 4Å: Chain A: D.5, H.6, C.7, P.11, G.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.7, A:G.12 EDO.4: 4 residues within 4Å: Chain A: Y.83, D.102, D.103 Chain B: N.56 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.56, A:D.102 EDO.5: 1 residues within 4Å: Chain B: W.32 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.32 EDO.6: 4 residues within 4Å: Chain B: A.47, C.48, A.75, P.76 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:C.48 Water bridges: B:C.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiong, Y. et al., Long-acting MIC-1/GDF15 molecules to treat obesity: Evidence from mice to monkeys. Sci Transl Med (2017)

Release Date

2017-11-01

Peptides

Growth/differentiation factor 15: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Growth/differentiation factor 15

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