SMTL ID : 5vz4.1

Receptor-growth factor crystal structure at 2.20 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-2-2-mer

Ligands

4 x BR: BROMIDE ION(Non-covalent)

BR.1: 2 residues within 4Å: Chain A: H.18, T.19 Ligand excluded by PLIP BR.2: 3 residues within 4Å: Chain A: K.69, D.71, T.72 Ligand excluded by PLIP BR.8: 2 residues within 4Å: Chain C: H.18, T.19 Ligand excluded by PLIP BR.9: 3 residues within 4Å: Chain C: K.69, D.71, T.72 Ligand excluded by PLIP

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: R.16, L.17, R.53, D.108, C.109 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.17, A:R.53, A:R.53, A:C.109 EDO.4: 3 residues within 4Å: Chain A: S.82, K.107, D.108 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.82, A:D.108 EDO.7: 4 residues within 4Å: Chain B: T.113, S.116, R.119, I.190 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.119 EDO.10: 5 residues within 4Å: Chain C: R.16, L.17, R.53, D.108, C.109 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:L.17, C:R.53, C:R.53, C:C.109 EDO.11: 3 residues within 4Å: Chain C: S.82, K.107, D.108 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.82, C:D.108 EDO.14: 4 residues within 4Å: Chain D: T.113, S.116, R.119, I.190 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.113, D:R.119

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain B: T.186, C.187, R.188, Q.202 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.186, B:C.187, B:R.188, B:Q.202 Salt bridges: B:R.188 SO4.6: 3 residues within 4Å: Chain B: D.84, K.96, R.207 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.84 Salt bridges: B:K.96, B:H.206, B:R.207 SO4.12: 4 residues within 4Å: Chain D: T.186, C.187, R.188, Q.202 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:C.187, D:R.188, D:Q.202 Salt bridges: D:R.188 SO4.13: 3 residues within 4Å: Chain D: D.84, K.96, R.207 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.84 Salt bridges: D:K.96, D:H.206, D:R.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hsu, J.Y. et al., Non-homeostatic body weight regulation through a brainstem-restricted receptor for GDF15. Nature (2017)

Release Date

2017-09-27

Peptides

Growth/differentiation factor 15: AC
GDNF family receptor alpha-like: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Growth/differentiation factor 15

GDNF family receptor alpha-like

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