SMTL ID : 5vwk.3 (3 other biounits)

Crystal structure of human Scribble PDZ1:Beta-PIX complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x PRO- ALA- TRP- ASP- GLU- THR- ASN- LEU: Beta-PIX(Non-covalent)

PRO-ALA-TRP-ASP-GLU-THR-ASN-LEU.1: 19 residues within 4Å: Chain A: G.43, L.44, G.45, I.46, S.47, I.48, A.49, G.50, G.53, S.54, T.55, P.56, Y.57, S.67, R.68, H.99, V.103, L.106, R.107 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:I.46, A:I.48, A:A.49, A:T.55, A:Y.57, A:V.103, A:R.107 Hydrogen bonds: A:L.44, A:G.45, A:I.46, A:I.46, A:I.46, A:S.47, A:I.48, A:I.48, A:G.50, A:G.53, A:S.54, A:S.54, A:T.55, A:T.55, A:S.67, A:S.67, A:R.68, A:R.68, A:H.99 Water bridges: A:G.53, A:S.54, A:R.107 Salt bridges: A:R.68, A:H.99

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: H.100, V.103, R.107 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.100, A:R.107 SO4.3: 2 residues within 4Å: Chain A: R.68, S.70 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.70 Water bridges: A:E.71 Salt bridges: A:R.68 SO4.4: 3 residues within 4Å: Chain A: K.85, L.87, W.118 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.85 SO4.5: 1 residues within 4Å: Chain A: Q.114 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, K.Y.B. et al., Structural basis for the differential interaction of Scribble PDZ domains with the guanine nucleotide exchange factor beta-PIX. J. Biol. Chem. (2017)

Release Date

2017-11-08

Peptides

Protein scribble homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Protein scribble homolog

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