SMTL ID : 6xa8.2 (1 other biounit)

Crystal Structure of Human Scribble PDZ1:Vangl2 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x LEU- GLN- SER- GLU- THR- SER- VAL: C-terminal peptide of Vangl2(Non-covalent)

LEU-GLN-SER-GLU-THR-SER-VAL.1: 17 residues within 4Å: Chain A: R.39, G.43, L.44, G.45, I.46, S.47, I.48, A.49, G.50, G.53, S.54, T.55, S.67, H.99, V.103, L.106, R.107 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.46, A:V.103, A:L.106, A:L.106 Hydrogen bonds: A:L.44, A:G.45, A:I.46, A:I.46, A:I.46, A:I.48, A:I.48, A:G.50, A:S.54, A:T.55, A:S.67, A:S.67 Water bridges: A:H.99

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: K.85, L.87, W.118 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.85 EDO.3: 7 residues within 4Å: Chain A: I.28, E.30, E.31, R.81, R.119, E.120, R.121 No protein-ligand interaction detected (PLIP)

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 3 residues within 4Å: Chain A: H.100, V.103, E.104 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.100 PO4.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

How, J.Y. et al., Structural basis of the human Scribble-Vangl2 association in health and disease. Biochem.J. (2021)

Release Date

2021-03-24

Peptides

Protein scribble homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protein scribble homolog

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