SMTL ID : 5vwz.1

Bak in complex with Bim-h3Pc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 1PG: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL(Non-covalent)

1PG.1: 5 residues within 4Å: Chain C: Y.127, Q.128, H.129, G.130, T.132 No protein-ligand interaction detected (PLIP) 1PG.2: 9 residues within 4Å: Chain A: H.83 Chain B: D.1, M.2, W.7 Chain C: T.79, H.83 Chain D: M.2, W.7 Ligands: NH4.3 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.83

1 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.3: 4 residues within 4Å: Chain B: D.1 Chain D: D.1, M.2 Ligands: 1PG.2 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:M.2 Water bridges: B:D.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brouwer, J.M. et al., Conversion of Bim-BH3 from Activator to Inhibitor of Bak through Structure-Based Design. Mol. Cell (2017)

Release Date

2017-11-15

Peptides

Bcl-2 homologous antagonist/killer: AC
Bcl-2-like protein 11: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Bcl-2 homologous antagonist/killer

Bcl-2-like protein 11

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