SMTL ID : 5vx0.1

Bak in complex with Bim-h3Glg

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-2-2-mer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 5 residues within 4Å: Chain A: M.6, V.11, D.14, G.160, W.161 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.14 MG.2: 2 residues within 4Å: Chain A: T.87, A.88 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain A: N.108, W.109, W.154 Chain B: N.20 No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain A: Q.57, R.60 No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 4 residues within 4Å: Chain C: R.72, Y.73, E.76 Chain D: E.11 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:E.11, D:E.11, C:E.76 Water bridges: C:R.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brouwer, J.M. et al., Conversion of Bim-BH3 from Activator to Inhibitor of Bak through Structure-Based Design. Mol. Cell (2017)

Release Date

2017-11-15

Peptides

Bcl-2 homologous antagonist/killer: AC
Bcl-2-like protein 11: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Bcl-2 homologous antagonist/killer

Bcl-2-like protein 11

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