SMTL ID : 5vzw.1

TRIM23 RING domain in complex with UbcH5-Ub

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain C: C.51, H.53, C.72, F.74, D.75 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.51, C:H.53, C:C.72, C:D.75 ZN.2: 6 residues within 4Å: Chain C: C.31, V.33, C.34, K.44, C.56, C.59 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.31, C:C.34, C:C.56, C:C.59 ZN.3: 5 residues within 4Å: Chain D: C.51, H.53, C.72, F.74, D.75 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:C.51, D:H.53, D:C.72, D:D.75, D:D.75 ZN.4: 6 residues within 4Å: Chain D: C.31, V.33, C.34, K.44, C.56, C.59 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.31, D:C.34, D:C.56, D:C.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dawidziak, D.M. et al., Structure and catalytic activation of the TRIM23 RING E3 ubiquitin ligase. Proteins (2017)

Release Date

2017-08-09

Peptides

Ubiquitin-conjugating enzyme E2 D2: AE
Ubiquitin: BF
E3 ubiquitin-protein ligase TRIM23: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
B

B
C

F
D

C
F

D
G

Ubiquitin-conjugating enzyme E2 D2

Ubiquitin

E3 ubiquitin-protein ligase TRIM23

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