SMTL ID : 7ahz.5 (5 other biounits)

Crystal structure of Western clawed frog MDM2 RING domain homodimer bound to UbcH5B-Ub

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.18, I.20, C.21, R.24, C.41, C.44 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.18, A:C.21, A:C.41, A:C.44 ZN.2: 5 residues within 4Å: Chain A: H.32, H.37, C.55, V.57, C.58 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.32, A:H.37, A:C.55, A:C.58

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain B: N.79, N.81, S.83 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Magnussen, H.M. et al., Identification of a Catalytic Active but Non-Aggregating MDM2 RING Domain Variant. J.Mol.Biol. (2021)

Release Date

2021-01-20

Peptides

E3 ubiquitin-protein ligase Mdm2: A
Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast): B
Polyubiquitin-B: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
GGG

B
HHH

C
III

E3 ubiquitin-protein ligase Mdm2

Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)

Polyubiquitin-B

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