SMTL ID : 5w0r.1 (1 other biounit)

Crystal structure of MBP fused activation-induced cytidine deaminase (AID) in complex with cacodylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.424, C.455, C.458 Ligands: CAC.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.424, A:C.455, A:C.458

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.2: 9 residues within 4Å: Chain A: T.395, H.424, W.452, S.453, P.454, C.455, C.458, Y.482 Ligands: ZN.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.395, A:C.455 Water bridges: A:T.395, A:V.425, A:V.425

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: T.367, N.368, A.370, F.414 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.367, A:A.370, H2O.3, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiao, Q. et al., AID Recognizes Structured DNA for Class Switch Recombination. Mol. Cell (2017)

Release Date

2017-08-16

Peptides

MBP fused activation-induced cytidine deaminase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

MBP fused activation-induced cytidine deaminase

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