SMTL ID : 5w0u.1 (1 other biounit)

Crystal structure of MBP fused activation-induced cytidine deaminase (AID) in complex with dCMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.424, C.455, C.458 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.424, A:C.455, A:C.458, H2O.1

1 x DCM: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE(Non-covalent)

DCM.2: 7 residues within 4Å: Chain A: R.393, T.395, N.419, S.453, P.454, C.455, Y.482 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.419, A:N.419, A:C.455, A:Y.482 Salt bridges: A:R.393 pi-Stacking: A:H.424, A:Y.482

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: T.367, N.368, A.370, D.413, F.414 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.413

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: R.475, F.477, K.510, D.511, Y.514 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.475, A:R.475, A:K.510

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiao, Q. et al., AID Recognizes Structured DNA for Class Switch Recombination. Mol. Cell (2017)

Release Date

2017-08-16

Peptides

Maltose-binding periplasmic protein,Single-stranded DNA cytosine deaminase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Maltose-binding periplasmic protein,Single-stranded DNA cytosine deaminase

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