SMTL ID : 5w5u.1

Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with cyclic peptide CP141037 (P4)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

hetero-3-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain B: E.147, E.150, S.151, N.154, T.156 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.147, B:E.147 NAG-NAG.8: 5 residues within 4Å: Chain E: E.147, E.150, S.151, N.154, T.156 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:E.147, E:E.147, E:E.147 NAG-NAG.15: 5 residues within 4Å: Chain H: E.147, E.150, S.151, N.154, T.156 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:E.147, H:E.147, H:E.147

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.286 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.286 NAG.3: 1 residues within 4Å: Chain A: N.23 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.23 Water bridges: A:T.25 NAG.4: 1 residues within 4Å: Chain A: N.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.11 NAG.5: 1 residues within 4Å: Chain A: N.268 No protein-ligand interaction detected (PLIP) NAG.9: 1 residues within 4Å: Chain D: N.286 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.286 NAG.10: 1 residues within 4Å: Chain D: N.23 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.23 NAG.11: 1 residues within 4Å: Chain D: N.11 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.11 NAG.12: 1 residues within 4Å: Chain D: N.268 No protein-ligand interaction detected (PLIP) NAG.16: 1 residues within 4Å: Chain G: N.286 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.286 NAG.17: 1 residues within 4Å: Chain G: N.23 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.23 NAG.18: 1 residues within 4Å: Chain G: N.11 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.11 NAG.19: 1 residues within 4Å: Chain G: N.268 No protein-ligand interaction detected (PLIP)

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: R.74, S.75 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain B: Y.24, H.25, H.26, G.33, A.35, R.153 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain D: R.74, S.75 Ligand excluded by PLIP CL.14: 6 residues within 4Å: Chain E: Y.24, H.25, H.26, G.33, A.35, R.153 Ligand excluded by PLIP CL.20: 2 residues within 4Å: Chain G: R.74, S.75 Ligand excluded by PLIP CL.21: 6 residues within 4Å: Chain H: Y.24, H.25, H.26, G.33, A.35, R.153 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kadam, R.U. et al., Potent peptidic fusion inhibitors of influenza virus. Science (2017)

Release Date

2017-10-04

Peptides

Hemagglutinin: ADG
Hemagglutinin: BEH
ACE-PH8-ORN-MLE-GLU-TYR-PHE-GLU-TRP-LEU-SER-BAL: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

B
B

E
B

H
B

C
D

F
D

I
D

Hemagglutinin

Hemagglutinin

ACE-PH8-ORN-MLE-GLU-TYR-PHE-GLU-TRP-LEU-SER-BAL

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