SMTL ID : 5w5x.1 (1 other biounit)

Crystal structure of BAXP168G in complex with an activating antibody

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: F.10, S.12, E.104, Y.139, P.140, R.141, D.142 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.12, A:Y.139, A:R.141, A:D.142 EDO.2: 5 residues within 4Å: Chain A: Q.38, N.39, L.40, G.41, E.42 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.41, A:E.42 EDO.3: 1 residues within 4Å: Chain A: T.56 1 PLIP interactions: 1 interactions with chain B Water bridges: B:E.106 EDO.4: 1 residues within 4Å: Chain A: D.150 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: R.141, I.143, V.162, M.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.141, A:R.141 Water bridges: A:I.143 EDO.6: 8 residues within 4Å: Chain A: Q.37, K.45, L.47, P.59, R.61, F.62, E.81, D.82 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.37, A:K.45, A:R.61, A:E.81, A:D.82 Water bridges: A:N.39 EDO.8: 10 residues within 4Å: Chain A: L.159, S.161, S.175, T.177 Chain B: F.171, P.172, V.174, T.181, L.182, T.183 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.175, B:P.172, B:T.183 EDO.9: 3 residues within 4Å: Chain B: V.93, Q.110, G.111 No protein-ligand interaction detected (PLIP) EDO.10: 2 residues within 4Å: Chain B: N.160, Q.196 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.7: 2 residues within 4Å: Chain A: E.184, H.188 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.184, A:E.184, A:H.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robin, A.Y. et al., Ensemble Properties of Bax Determine Its Function. Structure (2018)

Release Date

2018-06-27

Peptides

3C10 Fab' light chain: A
3C10 Fab' heavy chain: B
Apoptosis regulator BAX: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
A

3C10 Fab' light chain

3C10 Fab' heavy chain

Apoptosis regulator BAX

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