SMTL ID : 5w5x.2 (1 other biounit)

Crystal structure of BAXP168G in complex with an activating antibody

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-2-mer

Ligands

18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: F.10, S.12, E.104, Y.139, P.140, R.141, D.142 Ligand excluded by PLIP EDO.2: 5 residues within 4Å: Chain A: Q.38, N.39, L.40, G.41, E.42 Ligand excluded by PLIP EDO.3: 1 residues within 4Å: Chain A: T.56 Ligand excluded by PLIP EDO.4: 1 residues within 4Å: Chain A: D.150 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: R.141, I.143, V.162, M.174 Ligand excluded by PLIP EDO.6: 8 residues within 4Å: Chain A: Q.37, K.45, L.47, P.59, R.61, F.62, E.81, D.82 Ligand excluded by PLIP EDO.8: 10 residues within 4Å: Chain A: L.159, S.161, S.175, T.177 Chain B: F.171, P.172, V.174, T.181, L.182, T.183 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain B: V.93, Q.110, G.111 Ligand excluded by PLIP EDO.10: 2 residues within 4Å: Chain B: N.160, Q.196 Ligand excluded by PLIP EDO.11: 7 residues within 4Å: Chain D: F.10, S.12, E.104, Y.139, P.140, R.141, D.142 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain D: Q.38, N.39, L.40, G.41, E.42 Ligand excluded by PLIP EDO.13: 1 residues within 4Å: Chain D: T.56 Ligand excluded by PLIP EDO.14: 1 residues within 4Å: Chain D: D.150 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain D: R.141, I.143, V.162, M.174 Ligand excluded by PLIP EDO.16: 8 residues within 4Å: Chain D: Q.37, K.45, L.47, P.59, R.61, F.62, E.81, D.82 Ligand excluded by PLIP EDO.18: 10 residues within 4Å: Chain D: L.159, S.161, S.175, T.177 Chain E: F.171, P.172, V.174, T.181, L.182, T.183 Ligand excluded by PLIP EDO.19: 3 residues within 4Å: Chain E: V.93, Q.110, G.111 Ligand excluded by PLIP EDO.20: 2 residues within 4Å: Chain E: N.160, Q.196 Ligand excluded by PLIP

2 x ZN: ZINC ION(Non-covalent)

ZN.7: 5 residues within 4Å: Chain A: E.184, H.188 Chain D: E.184, H.188 Ligands: ZN.17 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain A Metal complexes: D:E.184, D:H.188, A:E.184, A:E.184, A:H.188 ZN.17: 5 residues within 4Å: Chain A: E.184, H.188 Chain D: E.184, H.188 Ligands: ZN.7 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain A Metal complexes: D:E.184, D:H.188, A:E.184, A:E.184, A:H.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robin, A.Y. et al., Ensemble Properties of Bax Determine Its Function. Structure (2018)

Release Date

2018-06-27

Peptides

3C10 Fab' light chain: AD
3C10 Fab' heavy chain: BE
Apoptosis regulator BAX: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

D
L

B
H

E
H

C
A

F
A

3C10 Fab' light chain

3C10 Fab' heavy chain

Apoptosis regulator BAX

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