SMTL ID : 5w6t.1

Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with cyclic peptide CP151070 (P7)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

hetero-3-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: T.13, N.23, T.25 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.13 NAG-NAG.7: 3 residues within 4Å: Chain D: T.13, N.23, T.25 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:T.13 NAG-NAG.13: 3 residues within 4Å: Chain G: T.13, N.23, T.25 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:T.13

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.11 NAG.3: 1 residues within 4Å: Chain A: N.268 No protein-ligand interaction detected (PLIP) NAG.8: 1 residues within 4Å: Chain D: N.11 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.11 NAG.9: 1 residues within 4Å: Chain D: N.268 No protein-ligand interaction detected (PLIP) NAG.14: 1 residues within 4Å: Chain G: N.11 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.11 NAG.15: 1 residues within 4Å: Chain G: N.268 No protein-ligand interaction detected (PLIP)

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: N.38, N.275, T.276, A.284, I.285, N.286 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.284 GOL.5: 7 residues within 4Å: Chain A: N.64, E.86, N.87, G.88, I.89, C.90, R.220 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.64, A:N.64, A:N.87, A:G.88, A:I.89, A:R.220 GOL.10: 6 residues within 4Å: Chain D: N.38, N.275, T.276, A.284, I.285, N.286 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:A.284 GOL.11: 7 residues within 4Å: Chain D: N.64, E.86, N.87, G.88, I.89, C.90, R.220 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:N.64, D:N.64, D:N.87, D:G.88, D:I.89, D:R.220 GOL.16: 6 residues within 4Å: Chain G: N.38, N.275, T.276, A.284, I.285, N.286 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:A.284 GOL.17: 7 residues within 4Å: Chain G: N.64, E.86, N.87, G.88, I.89, C.90, R.220 6 PLIP interactions: 6 interactions with chain G Hydrogen bonds: G:N.64, G:N.64, G:N.87, G:G.88, G:I.89, G:R.220

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain B: R.106 Chain E: R.106 Chain H: R.106 Ligands: CL.12, CL.18 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain B: R.106 Chain E: R.106 Chain H: R.106 Ligands: CL.6, CL.18 Ligand excluded by PLIP CL.18: 5 residues within 4Å: Chain B: R.106 Chain E: R.106 Chain H: R.106 Ligands: CL.6, CL.12 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kadam, R.U. et al., Potent peptidic fusion inhibitors of influenza virus. Science (2017)

Release Date

2017-10-04

Peptides

Hemagglutinin: ADG
Hemagglutinin: BEH
ACE-PH8-ORN-MLE-GLU-TYR-ZCL-GLU-TRP-LEU-SER-9WV: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

B
B

E
B

H
B

C
F

F
F

I
F

Hemagglutinin

Hemagglutinin

ACE-PH8-ORN-MLE-GLU-TYR-ZCL-GLU-TRP-LEU-SER-9WV

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