SMTL ID : 5w78.1

Human acyloxyacyl hydrolase (AOAH), proteolytically processed

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

hetero-1-1-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.46 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain B: N.55, S.57, D.58, H.73, Q.74 1 PLIP interactions: 1 interactions with chain B Water bridges: B:H.73 NAG-NAG.3: 7 residues within 4Å: Chain B: D.229, P.230, V.231, N.314, T.316, L.317, L.320 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.229

2 x MYR: MYRISTIC ACID(Non-covalent)

MYR.4: 18 residues within 4Å: Chain A: H.26, V.29, G.30, C.31, L.33, V.34, V.35, V.73, F.77, I.81, L.98, F.100 Chain B: I.7, L.10, L.13 Ligands: MYR.5, PLM.8, DAO.9 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.29, A:V.34, A:V.73, A:F.100, B:I.7, B:L.10 Salt bridges: A:H.26 MYR.5: 20 residues within 4Å: Chain A: V.34, I.38, M.53, L.56, C.57, L.60, L.66, T.69, C.70, V.73, I.74 Chain B: I.7, L.13, I.16, C.17, I.20, L.136, L.140 Ligands: MYR.4, DAO.9 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.34, A:I.38, A:M.53, A:L.56, A:I.74, B:I.20

2 x CA: CALCIUM ION(Non-covalent)

CA.6: 6 residues within 4Å: Chain B: D.53, N.55, D.56, D.58, E.59, V.61 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.53, B:N.55, B:D.58, B:V.61, H2O.5 CA.7: 6 residues within 4Å: Chain B: D.71, D.75, N.77, N.79, I.81, E.93 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.71, B:D.75, B:I.81, B:E.93

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.8: 22 residues within 4Å: Chain A: V.29, V.32, L.33, L.112 Chain B: S.111, F.116, I.118, I.123, N.188, G.189, N.221, H.281, L.283, L.295, F.298, L.299, P.306, V.374, D.375, F.377, H.378 Ligands: MYR.4 11 PLIP interactions: 8 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:F.116, B:I.118, B:L.283, B:L.295, B:P.306, A:V.32, A:L.33, A:L.112 Hydrogen bonds: B:S.111, B:G.189, B:N.221

1 x DAO: LAURIC ACID(Non-covalent)

DAO.9: 15 residues within 4Å: Chain A: L.33, V.34, V.37, L.56, L.60 Chain B: I.7, I.118, W.122, I.123, F.133, L.136, L.140, L.144 Ligands: MYR.4, MYR.5 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.133, B:L.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gorelik, A. et al., Crystal structure of the mammalian lipopolysaccharide detoxifier. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-01-03

Peptides

Acyloxyacyl hydrolase: A
Acyloxyacyl hydrolase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acyloxyacyl hydrolase

Acyloxyacyl hydrolase

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