SMTL ID : 5w7e.1 (1 other biounit)

Murine acyloxyacyl hydrolase (AOAH), S262A mutant, with dimyristoyl phosphatidylcholine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.171, D.173, D.175, H.177, D.192, D.195 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.171, A:D.173, A:D.175, A:H.177, A:D.192, A:D.195 CA.2: 9 residues within 4Å: Chain A: D.173, D.175, D.192, N.194, D.195, D.197, K.198, V.200, Y.201 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.175, A:D.192, A:N.194, A:D.197, A:V.200 CA.3: 7 residues within 4Å: Chain A: D.210, D.214, N.216, N.218, I.220, W.221, E.232 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.210, A:D.214, A:I.220, A:E.232

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 5 residues within 4Å: Chain A: V.370, N.453, T.455, L.456, L.459 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.453, A:L.456 NAG.5: 4 residues within 4Å: Chain A: N.194, S.196, D.197, Q.213 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.194, A:D.197 Water bridges: A:N.194

1 x FAW: (2S)-3-hydroxypropane-1,2-diyl ditetradecanoate(Non-covalent)

FAW.6: 37 residues within 4Å: Chain A: L.29, V.33, D.249, A.250, A.251, F.255, I.257, W.261, L.262, L.275, L.279, L.283, N.327, G.328, I.358, G.359, N.360, P.406, D.407, G.408, F.410, L.411, F.434, L.438, L.443, P.445, W.449, F.490, F.492, L.509, I.510, V.513, D.514, F.516, H.517, P.518, A.522 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.29, A:I.257, A:I.358, A:I.358, A:F.410, A:L.411, A:L.411, A:W.449, A:F.492, A:F.492, A:V.513, A:D.514, A:F.516, A:F.516, A:F.516, A:P.518 Hydrogen bonds: A:A.250, A:G.328, A:N.360 Salt bridges: A:H.517, A:H.517

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gorelik, A. et al., Crystal structure of the mammalian lipopolysaccharide detoxifier. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-01-03

Peptides

Acyloxyacyl hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Acyloxyacyl hydrolase

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