SMTL ID : 5w7f.2 (1 other biounit)

Murine acyloxyacyl hydrolase (AOAH), S262A mutant, with lipid A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 8 residues within 4Å: Chain A: D.171, D.173, D.175, H.177, S.178, D.192, D.195 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.171, A:D.175, A:H.177, A:D.192, A:D.195 CA.2: 9 residues within 4Å: Chain A: D.173, D.175, D.192, N.194, D.195, D.197, K.198, V.200 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.173, A:D.175, A:D.192, A:N.194, A:V.200 CA.3: 7 residues within 4Å: Chain A: D.210, D.214, S.215, N.216, N.218, I.220, E.232 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.210, A:E.232

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 5 residues within 4Å: Chain A: V.370, N.453, T.455, L.456, L.459 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.453

1 x FTT: 3-HYDROXY-TETRADECANOIC ACID(Non-covalent)

FTT.5: 20 residues within 4Å: Chain A: L.29, V.33, A.250, F.255, I.257, L.262, N.327, G.328, H.420, L.422, F.434, L.438, L.443, P.445, V.513, D.514, F.516, H.517 Ligands: DAO.6, GCS.7 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.33, A:F.255, A:L.262, A:F.434, A:L.438, A:P.445, A:V.513 Hydrogen bonds: A:H.517

1 x DAO: LAURIC ACID(Non-covalent)

DAO.6: 20 residues within 4Å: Chain A: D.249, A.250, A.251, N.327, G.328, A.329, I.358, G.359, N.360, P.406, D.407, G.408, F.410, L.411, W.449, F.492, F.516, H.517, P.518 Ligands: FTT.5 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.250, A:I.358, A:P.406, A:F.410, A:L.411, A:F.492, A:F.516, A:F.516, A:F.516 Hydrogen bonds: A:A.250, A:G.328, A:N.360

1 x GCS: 2-amino-2-deoxy-beta-D-glucopyranose(Non-covalent)

GCS.7: 4 residues within 4Å: Chain A: K.326, N.327, G.328 Ligands: FTT.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gorelik, A. et al., Crystal structure of the mammalian lipopolysaccharide detoxifier. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-01-03

Peptides

Acyloxyacyl hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Acyloxyacyl hydrolase

Related Entries With Identical Sequence