SMTL ID : 5w8t.1 (1 other biounit)

Crystal structure of MERS-CoV papain-like protease in complex with the C-terminal domain of human ISG15

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.76 Å

Oligo State

hetero-1-1-mer

Ligands

1 x AYE: prop-2-en-1-amine(Covalent)

AYE.1: 6 residues within 4Å: Chain A: G.78 Chain B: N.109, C.111, P.163, G.277, H.278 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.277

5 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.191, C.194, C.226, C.228 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.191, B:C.194, B:C.226, B:C.228 ZN.3: 1 residues within 4Å: Chain B: E.231 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.231, B:E.231 ZN.4: 1 residues within 4Å: Chain B: E.231 No protein-ligand interaction detected (PLIP) ZN.5: 2 residues within 4Å: Chain B: C.32, H.81 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.32, B:H.81, H2O.1 ZN.6: 2 residues within 4Å: Chain B: C.32, D.58 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.32, B:D.58, B:D.58

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.7: 6 residues within 4Å: Chain A: E.49, F.71 Chain B: Y.209, M.222, Y.224, R.234 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.71, A:F.71, B:Y.224 MPD.8: 4 residues within 4Å: Chain B: D.39, S.85, A.88, A.89 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:D.39, B:A.88 Hydrogen bonds: B:S.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Daczkowski, C.M. et al., Structurally Guided Removal of DeISGylase Biochemical Activity from Papain-Like Protease Originating from Middle East Respiratory Syndrome Coronavirus. J. Virol. (2017)

Release Date

2017-09-27

Peptides

Ubiquitin-like protein ISG15: A
ORF1ab: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Ubiquitin-like protein ISG15

ORF1ab

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