SMTL ID : 5w8t.2 (1 other biounit)

Crystal structure of MERS-CoV papain-like protease in complex with the C-terminal domain of human ISG15

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.76 Å

Oligo State

hetero-1-1-mer

Ligands

1 x AYE: prop-2-en-1-amine(Covalent)

AYE.1: 6 residues within 4Å: Chain A: G.78 Chain B: N.109, C.111, P.163, G.277, H.278 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.277

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 5 residues within 4Å: Chain A: E.49, F.71 Chain B: M.222, Y.224, R.234 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:M.222, A:F.71 Hydrogen bonds: B:R.234, A:R.9 MPD.3: 7 residues within 4Å: Chain A: D.42, L.43, R.75, R.77 Chain B: T.159, P.163, D.164 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:P.163, B:D.164 Hydrophobic interactions: A:L.43 MPD.5: 4 residues within 4Å: Chain B: G.37, Y.55, Y.84, K.87 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.55 Hydrogen bonds: B:Y.84, B:K.87 MPD.6: 5 residues within 4Å: Chain B: F.34, D.39, S.85, A.88, A.89 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.34, B:D.39, B:A.88 Hydrogen bonds: B:D.39, B:S.85

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain B: C.191, C.194, C.226, C.228 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.191, B:C.194, B:C.226, B:C.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Daczkowski, C.M. et al., Structurally Guided Removal of DeISGylase Biochemical Activity from Papain-Like Protease Originating from Middle East Respiratory Syndrome Coronavirus. J. Virol. (2017)

Release Date

2017-09-27

Peptides

Ubiquitin-like protein ISG15: A
ORF1ab: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

Ubiquitin-like protein ISG15

ORF1ab

Related Entries With Identical Sequence