SMTL ID : 5wc0.1

katanin hexamer in spiral conformation

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 17 residues within 4Å: Chain A: I.195, I.196, P.234, P.235, G.236, T.237, G.238, K.239, T.240, L.241, D.292, L.370, G.398, A.399, V.402 Chain B: R.351, R.352 18 PLIP interactions: 14 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:I.196, A:I.196, A:G.236, A:T.237, A:G.238, A:K.239, A:T.240, A:T.240, A:T.240, A:L.241, A:D.292, A:D.292 Salt bridges: A:K.239, A:K.239, B:R.351, B:R.351, B:R.351, B:R.352 ATP.2: 17 residues within 4Å: Chain B: I.195, I.196, M.198, P.234, P.235, G.236, T.237, G.238, K.239, T.240, L.241, D.292, L.370, G.398, A.399 Chain C: R.351, R.352 17 PLIP interactions: 5 interactions with chain C, 12 interactions with chain B Salt bridges: C:R.351, C:R.351, C:R.351, C:R.352, C:R.352, B:K.239, B:K.239 Hydrogen bonds: B:I.196, B:I.196, B:G.236, B:T.237, B:G.238, B:K.239, B:T.240, B:T.240, B:L.241, B:D.292 ATP.3: 16 residues within 4Å: Chain C: I.195, I.196, P.234, P.235, G.236, T.237, G.238, K.239, T.240, L.241, D.292, L.370, G.398, A.399 Chain D: R.351, R.352 16 PLIP interactions: 12 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:I.196, C:I.196, C:G.236, C:T.237, C:G.238, C:K.239, C:T.240, C:T.240, C:T.240, C:D.292 Salt bridges: C:K.239, C:K.239, D:R.351, D:R.351, D:R.351, D:R.352 ATP.4: 16 residues within 4Å: Chain D: I.195, I.196, M.198, P.234, P.235, G.236, T.237, G.238, K.239, T.240, L.241, L.370, G.398, A.399 Chain E: R.351, R.352 16 PLIP interactions: 4 interactions with chain E, 12 interactions with chain D Salt bridges: E:R.351, E:R.351, E:R.351, E:R.352, D:K.239, D:K.239 Hydrogen bonds: D:I.196, D:I.196, D:G.236, D:T.237, D:G.238, D:K.239, D:T.240, D:T.240, D:T.240, D:L.241 ATP.5: 19 residues within 4Å: Chain E: D.194, I.195, I.196, M.198, P.234, P.235, G.236, T.237, G.238, K.239, T.240, L.241, D.292, L.370, G.398, A.399, V.402 Chain F: R.351, R.352 17 PLIP interactions: 4 interactions with chain F, 13 interactions with chain E Hydrogen bonds: F:R.352, E:I.196, E:I.196, E:G.236, E:T.237, E:G.238, E:K.239, E:K.239, E:T.240, E:T.240, E:L.241, E:D.292 Salt bridges: F:R.351, F:R.351, F:R.352, E:K.239, E:K.239 ATP.6: 15 residues within 4Å: Chain F: D.194, I.195, I.196, P.234, P.235, G.236, T.237, G.238, K.239, T.240, L.241, D.292, G.398, A.399, V.402 12 PLIP interactions: 12 interactions with chain F Hydrogen bonds: F:I.196, F:I.196, F:G.236, F:T.237, F:G.238, F:K.239, F:T.240, F:T.240, F:L.241, F:D.292, F:D.292 Salt bridges: F:K.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zehr, E. et al., Katanin spiral and ring structures shed light on power stroke for microtubule severing. Nat. Struct. Mol. Biol. (2017)

Release Date

2017-08-09

Peptides

Meiotic spindle formation protein mei-1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Meiotic spindle formation protein mei-1

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