SMTL ID : 5wcb.1

Katanin hexamer in the ring conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

5 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 15 residues within 4Å: Chain B: D.194, I.195, I.196, P.234, P.235, G.236, T.237, G.238, K.239, T.240, L.241, D.292, L.370, G.398, A.399 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:I.196, B:I.196, B:G.236, B:T.237, B:G.238, B:K.239, B:T.240, B:T.240, B:T.240, B:L.241, B:D.292, B:D.292 Salt bridges: B:K.239 ATP.2: 14 residues within 4Å: Chain C: I.195, I.196, P.235, G.236, T.237, G.238, K.239, T.240, L.241, D.292, L.370, G.398, A.399 Chain D: R.352 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:I.196, C:I.196, C:G.236, C:T.237, C:G.238, C:K.239, C:T.240, C:T.240, C:T.240, C:L.241, C:D.292, C:A.399 Salt bridges: C:K.239 ATP.3: 17 residues within 4Å: Chain D: D.194, I.195, I.196, M.198, P.235, G.236, T.237, G.238, K.239, T.240, L.241, D.292, L.370, G.398, A.399, V.402 Chain E: R.352 13 PLIP interactions: 12 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:I.196, D:I.196, D:G.236, D:T.237, D:G.238, D:K.239, D:T.240, D:T.240, D:T.240, D:L.241, D:A.399 Salt bridges: D:K.239, E:R.352 ATP.4: 15 residues within 4Å: Chain E: D.194, I.195, I.196, P.235, G.236, T.237, G.238, K.239, T.240, L.241, D.292, L.370, G.398, A.399 Chain F: R.351 13 PLIP interactions: 12 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:I.196, E:I.196, E:G.236, E:T.237, E:G.238, E:K.239, E:T.240, E:T.240, E:T.240, E:L.241, E:D.292 Salt bridges: E:K.239, F:R.351 ATP.5: 15 residues within 4Å: Chain F: I.195, I.196, P.234, P.235, G.236, T.237, G.238, K.239, T.240, L.241, D.292, L.370, G.398, A.399, V.402 14 PLIP interactions: 14 interactions with chain F Hydrogen bonds: F:I.196, F:I.196, F:G.236, F:T.237, F:G.238, F:K.239, F:T.240, F:T.240, F:T.240, F:L.241, F:D.292, F:D.292 Salt bridges: F:K.239, F:K.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zehr, E. et al., Katanin spiral and ring structures shed light on power stroke for microtubule severing. Nat. Struct. Mol. Biol. (2017)

Release Date

2017-08-09

Peptides

Meiotic spindle formation protein mei-1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Meiotic spindle formation protein mei-1

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