- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.36 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 16 x CD: CADMIUM ION(Non-covalent)
CD.2: 3 residues within 4Å:- Chain A: E.11
- Chain B: E.11
- Ligands: CD.14
Ligand excluded by PLIPCD.3: 2 residues within 4Å:- Chain A: H.531, E.548
Ligand excluded by PLIPCD.4: 2 residues within 4Å:- Chain A: D.543, D.547
Ligand excluded by PLIPCD.5: 3 residues within 4Å:- Chain A: C.112, C.128, H.253
Ligand excluded by PLIPCD.14: 3 residues within 4Å:- Chain A: E.11
- Chain B: E.11
- Ligands: CD.2
Ligand excluded by PLIPCD.15: 2 residues within 4Å:- Chain B: H.531, E.548
Ligand excluded by PLIPCD.16: 2 residues within 4Å:- Chain B: D.543, D.547
Ligand excluded by PLIPCD.17: 3 residues within 4Å:- Chain B: C.112, C.128, H.253
Ligand excluded by PLIPCD.26: 3 residues within 4Å:- Chain C: E.11
- Chain D: E.11
- Ligands: CD.38
Ligand excluded by PLIPCD.27: 2 residues within 4Å:- Chain C: H.531, E.548
Ligand excluded by PLIPCD.28: 2 residues within 4Å:- Chain C: D.543, D.547
Ligand excluded by PLIPCD.29: 3 residues within 4Å:- Chain C: C.112, C.128, H.253
Ligand excluded by PLIPCD.38: 3 residues within 4Å:- Chain C: E.11
- Chain D: E.11
- Ligands: CD.26
Ligand excluded by PLIPCD.39: 2 residues within 4Å:- Chain D: H.531, E.548
Ligand excluded by PLIPCD.40: 2 residues within 4Å:- Chain D: D.543, D.547
Ligand excluded by PLIPCD.41: 3 residues within 4Å:- Chain D: C.112, C.128, H.253
Ligand excluded by PLIP- 4 x ZN: ZINC ION(Non-covalent)
ZN.6: 4 residues within 4Å:- Chain A: C.597, C.600, C.613, C.616
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.597, A:C.600, A:C.613, A:C.616
ZN.18: 4 residues within 4Å:- Chain B: C.597, C.600, C.613, C.616
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.597, B:C.600, B:C.613, B:C.616
ZN.30: 4 residues within 4Å:- Chain C: C.597, C.600, C.613, C.616
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:C.597, C:C.600, C:C.613, C:C.616
ZN.42: 4 residues within 4Å:- Chain D: C.597, C.600, C.613, C.616
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.597, D:C.600, D:C.613, D:C.616
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 3 residues within 4Å:- Chain A: P.238, K.239, D.240
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.239, A:D.240
- Water bridges: A:D.240
SO4.8: 2 residues within 4Å:- Chain A: R.220, R.222
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.220, A:R.222
SO4.9: 6 residues within 4Å:- Chain A: P.301, S.302, E.305, K.612, C.616, G.617
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.302
- Water bridges: A:G.617
- Salt bridges: A:K.612
SO4.19: 3 residues within 4Å:- Chain B: P.238, K.239, D.240
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.239, B:D.240
- Water bridges: B:D.240
SO4.20: 2 residues within 4Å:- Chain B: R.220, R.222
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:R.220, B:R.222
SO4.21: 6 residues within 4Å:- Chain B: P.301, S.302, E.305, K.612, C.616, G.617
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.302
- Water bridges: B:G.617
- Salt bridges: B:K.612
SO4.31: 3 residues within 4Å:- Chain C: P.238, K.239, D.240
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:K.239, C:D.240
- Water bridges: C:D.240
SO4.32: 2 residues within 4Å:- Chain C: R.220, R.222
2 PLIP interactions:2 interactions with chain C- Salt bridges: C:R.220, C:R.222
SO4.33: 6 residues within 4Å:- Chain C: P.301, S.302, E.305, K.612, C.616, G.617
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:S.302
- Water bridges: C:G.617
- Salt bridges: C:K.612
SO4.43: 3 residues within 4Å:- Chain D: P.238, K.239, D.240
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:K.239, D:D.240
- Water bridges: D:D.240
SO4.44: 2 residues within 4Å:- Chain D: R.220, R.222
2 PLIP interactions:2 interactions with chain D- Salt bridges: D:R.220, D:R.222
SO4.45: 6 residues within 4Å:- Chain D: P.301, S.302, E.305, K.612, C.616, G.617
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:S.302
- Water bridges: D:G.617
- Salt bridges: D:K.612
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.10: 5 residues within 4Å:- Chain A: L.84, K.108, L.111, Y.408, S.409
Ligand excluded by PLIPCL.22: 5 residues within 4Å:- Chain B: L.84, K.108, L.111, Y.408, S.409
Ligand excluded by PLIPCL.34: 5 residues within 4Å:- Chain C: L.84, K.108, L.111, Y.408, S.409
Ligand excluded by PLIPCL.46: 5 residues within 4Å:- Chain D: L.84, K.108, L.111, Y.408, S.409
Ligand excluded by PLIP- 8 x PM7: (5aS,12aS,13aS)-12,12-dimethyl-2,3,11,12,12a,13-hexahydro-1H,5H,6H-5a,13a-(epiminomethano)indolizino[7,6-b]carbazol-14-one(Non-covalent)
PM7.11: 13 residues within 4Å:- Chain A: P.85, V.130, G.131, A.132, P.133, V.136, L.137, F.489, I.493, E.494, I.573, L.641, W.645
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:P.85, A:V.136, A:L.137, A:F.489, A:I.493, A:I.493, A:I.573, A:L.641, A:W.645
- Hydrogen bonds: A:G.131, A:E.494
PM7.12: 11 residues within 4Å:- Chain A: W.421, H.507, I.510, K.655
- Chain C: G.179, G.433, K.434, S.435, A.436, P.437, A.438
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:W.421, A:I.510
- pi-Stacking: A:H.507, A:H.507
- Hydrogen bonds: C:G.433
PM7.23: 13 residues within 4Å:- Chain B: P.85, V.130, G.131, A.132, P.133, V.136, L.137, F.489, I.493, E.494, I.573, L.641, W.645
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:P.85, B:V.136, B:L.137, B:F.489, B:I.493, B:I.493, B:I.573, B:L.641, B:W.645
- Hydrogen bonds: B:G.131, B:E.494
PM7.24: 11 residues within 4Å:- Chain B: W.421, H.507, I.510, K.655
- Chain D: G.179, G.433, K.434, S.435, A.436, P.437, A.438
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain B- Hydrogen bonds: D:G.433
- Hydrophobic interactions: B:W.421, B:I.510
- pi-Stacking: B:H.507, B:H.507
PM7.35: 13 residues within 4Å:- Chain C: P.85, V.130, G.131, A.132, P.133, V.136, L.137, F.489, I.493, E.494, I.573, L.641, W.645
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:P.85, C:V.136, C:L.137, C:F.489, C:I.493, C:I.493, C:I.573, C:L.641, C:W.645
- Hydrogen bonds: C:G.131, C:E.494
PM7.36: 11 residues within 4Å:- Chain A: G.179, G.433, K.434, S.435, A.436, P.437, A.438
- Chain C: W.421, H.507, I.510, K.655
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain C- Hydrogen bonds: A:G.433
- Hydrophobic interactions: C:W.421, C:I.510
- pi-Stacking: C:H.507, C:H.507
PM7.47: 13 residues within 4Å:- Chain D: P.85, V.130, G.131, A.132, P.133, V.136, L.137, F.489, I.493, E.494, I.573, L.641, W.645
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:P.85, D:V.136, D:L.137, D:F.489, D:I.493, D:I.493, D:I.573, D:L.641, D:W.645
- Hydrogen bonds: D:G.131, D:E.494
PM7.48: 11 residues within 4Å:- Chain B: G.179, G.433, K.434, S.435, A.436, P.437, A.438
- Chain D: W.421, H.507, I.510, K.655
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain B- Hydrophobic interactions: D:W.421, D:I.510
- pi-Stacking: D:H.507, D:H.507
- Hydrogen bonds: B:G.433
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fraley, A.E. et al., Function and Structure of MalA/MalA', Iterative Halogenases for Late-Stage C-H Functionalization of Indole Alkaloids. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-08-16
- Peptides
- Flavin-dependent halogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.36 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 16 x CD: CADMIUM ION(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x PM7: (5aS,12aS,13aS)-12,12-dimethyl-2,3,11,12,12a,13-hexahydro-1H,5H,6H-5a,13a-(epiminomethano)indolizino[7,6-b]carbazol-14-one(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fraley, A.E. et al., Function and Structure of MalA/MalA', Iterative Halogenases for Late-Stage C-H Functionalization of Indole Alkaloids. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-08-16
- Peptides
- Flavin-dependent halogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A