SMTL ID : 5wha.4 (3 other biounits)

KRas G12V, bound to GDP and miniprotein 225-11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

hetero-1-2-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.21, D.61 Ligands: GDP.2 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.21, H2O.1, H2O.1

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 16 residues within 4Å: Chain A: A.15, V.16, G.17, V.18, G.19, K.20, S.21, A.22, N.120, K.121, D.123, L.124, S.149, A.150, K.151 Ligands: MG.1 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.17, A:V.18, A:G.19, A:K.20, A:S.21, A:A.22, A:N.120, A:K.121, A:K.121, A:A.150, A:K.151 Water bridges: A:K.20, A:S.21, A:S.21, A:S.21 Salt bridges: A:K.20, A:D.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McGee, J.H. et al., Exceptionally high-affinity Ras binders that remodel its effector domain. J. Biol. Chem. (2018)

Release Date

2018-01-03

Peptides

GTPase KRas: A
miniprotein 225-11: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

C
L

GTPase KRas

miniprotein 225-11

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