SMTL ID : 5wi5.1 (5 other biounits)

2.0 Angstrom Resolution Crystal Structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Streptococcus pneumoniae in Complex with Uridine-diphosphate-2(n-acetylglucosaminyl) butyric acid, (2R)-2-(phosphonooxy)propanoic acid and Magnesium.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 0V5: (2R)-2-(phosphonooxy)propanoic acid(Covalent)

0V5.1: 9 residues within 4Å: Chain A: K.97, M.98, R.99, G.122, C.123, T.124, R.128, R.404 Ligands: MG.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.99, A:T.124, A:R.128 Water bridges: A:R.99, A:A.100, A:G.122, A:R.128, A:R.404, A:R.404 Salt bridges: A:R.404

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 1 residues within 4Å: Ligands: 0V5.1 No protein-ligand interaction detected (PLIP)

1 x EPU: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID(Non-covalent)

EPU.3: 20 residues within 4Å: Chain A: K.26, N.27, L.30, A.100, R.128, P.129, I.130, D.131, L.132, H.133, F.167, S.169, V.170, G.171, T.311, D.312, V.334, F.335, R.338, L.377 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:L.30, A:A.100 Hydrogen bonds: A:N.27, A:R.128, A:D.131, A:L.132, A:H.133, A:S.169, A:V.170, A:G.171, A:D.312, A:R.338 Water bridges: A:R.128, A:R.128, A:R.128, A:R.128, A:R.128, A:H.133, A:S.169, A:S.169, A:Q.174, A:E.195, A:R.239, A:R.239, A:T.311, A:V.334, A:E.336, A:E.336, A:R.378, A:R.404 Salt bridges: A:K.26, A:R.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 2.0 Angstrom Resolution Crystal Structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Streptococcus pneumoniae in Complex with Uridine-diphosphate-2(n-acetylglucosaminyl) butyric acid, (2R)-2-(phosphonooxy)propanoic acid and Magnesium. To Be Published

Release Date

2017-08-02

Peptides

UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1

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