SMTL ID : 6nkj.1

1.3 Angstrom Resolution Crystal Structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Streptococcus pneumoniae in Complex with (2R)-2-(phosphonooxy)propanoic acid.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

2 x 0V5: (2R)-2-(phosphonooxy)propanoic acid(Covalent)

0V5.1: 8 residues within 4Å: Chain A: M.98, R.99, G.122, C.123, T.124, R.128, R.404 Ligands: CIT.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.99, A:T.124, A:R.128 Water bridges: A:K.97, A:R.99, A:R.404 Salt bridges: A:R.404 0V5.4: 8 residues within 4Å: Chain B: M.98, R.99, G.122, C.123, T.124, R.128, R.404 Ligands: CIT.6 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:R.99, B:T.124, B:R.128 Water bridges: B:S.96, B:K.97, B:R.99, B:R.99, B:R.404 Salt bridges: B:R.404

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 10 residues within 4Å: Chain A: K.26, N.27, I.125, R.128, D.312, R.338, D.376, L.377, R.378 Ligands: 0V5.1 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.125 Hydrogen bonds: A:N.27, A:R.128, A:R.128, A:D.312, A:L.377 Water bridges: A:K.26, A:D.312, A:D.312, A:R.404, A:R.404, A:R.404, A:R.404 Salt bridges: A:K.26, A:K.26, A:R.128, A:R.338, A:R.378, A:R.404 CIT.6: 10 residues within 4Å: Chain B: K.26, N.27, I.125, R.128, D.312, R.338, D.376, L.377, R.378 Ligands: 0V5.4 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:I.125 Hydrogen bonds: B:N.27, B:N.27, B:R.128, B:R.128, B:L.377 Water bridges: B:K.26, B:K.26, B:K.26, B:N.27, B:R.404, B:R.404, B:R.404 Salt bridges: B:K.26, B:K.26, B:R.128, B:R.338, B:R.378, B:R.404

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: Y.92, S.118, G.149, Y.150 Chain B: R.347 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: I.203, N.206 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 2 residues within 4Å: Chain B: G.42, H.229 2 PLIP interactions: 2 interactions with chain B Water bridges: B:K.43, B:K.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 1.3 Angstrom Resolution Crystal Structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Streptococcus pneumoniae in Complex with (2R)-2-(phosphonooxy)propanoic acid. To Be Published

Release Date

2019-01-16

Peptides

UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1

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