SMTL ID : 5wn1.1 (1 other biounit)

APE1 exonuclease product complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x DG- DC- DT- DG- DA- DT- DG- DC- DG: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*G)-3')(Non-covalent)

DG-DC-DT-DG-DA-DT-DG-DC-DG.1: 15 residues within 4Å: Chain A: E.54, K.56, Y.86, Y.129, N.132 Chain C: C.13, G.14, C.15, A.16, T.17, C.18, A.19, G.20, C.21 Ligands: NA.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.184

1 x CA: CALCIUM ION(Non-functional Binders)

CA.2: 1 residues within 4Å: Chain C: C.21 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain C: T.17, C.18 Ligands: DG-DC-DT-DG-DA-DT-DG-DC-DG.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whitaker, A.M. et al., Molecular snapshots of APE1 proofreading mismatches and removing DNA damage. Nat Commun (2018)

Release Date

2018-02-28

Peptides

DNA-(apurinic or apyrimidinic site) lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA-(apurinic or apyrimidinic site) lyase

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