SMTL ID : 7lpj.2 (1 other biounit)

APE1 Mn-bound phosphorothioate substrate complex with abasic ribonucleotide DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 2 residues within 4Å: Chain B: D.28, E.54 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.28, B:E.54, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hoitsma, N.M. et al., Altered APE1 activity on abasic ribonucleotides is mediated by changes in the nucleoside sugar pucker. Comput Struct Biotechnol J (2021)

Release Date

2021-08-04

Peptides

DNA-(apurinic or apyrimidinic site) lyase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
D

DNA-(apurinic or apyrimidinic site) lyase

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