SMTL ID : 5wnb.1 (1 other biounit)

Structure of antibody 3D3 bound to the linear epitope of RSV G

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: D.106, H.108 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.106, A:H.108 ZN.2: 3 residues within 4Å: Chain A: E.2, E.30, D.77 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.2, A:E.30, A:D.77 ZN.3: 2 residues within 4Å: Chain A: E.31 Chain C: P.11 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Metal complexes: A:E.31, C:P.11 ZN.4: 4 residues within 4Å: Chain A: H.175, T.194 Chain B: N.136, N.137 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.175, H2O.2 ZN.5: 2 residues within 4Å: Chain B: D.150, H.188 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.150, B:H.188 ZN.6: 3 residues within 4Å: Chain B: S.30, H.32 Ligands: ACY.8 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:H.32, ACY.8 ZN.7: 2 residues within 4Å: Chain B: E.79, E.81 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.79, B:E.81, B:E.81 ZN.9: 2 residues within 4Å: Chain C: D.1, H.3 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.1, C:H.3

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.8: 4 residues within 4Å: Chain B: H.32 Chain C: F.4, E.5 Ligands: ZN.6 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:F.4, C:E.5 Hydrogen bonds: C:E.5 Salt bridges: B:H.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fedechkin, S.O. et al., Structures of respiratory syncytial virus G antigen bound to broadly neutralizing antibodies. Sci Immunol (2018)

Release Date

2018-03-14

Peptides

mAb 3D3 Fab heavy chain: A
mAb 3D3 Fab light chain: B
Major surface glycoprotein G: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
B

mAb 3D3 Fab heavy chain

mAb 3D3 Fab light chain

Major surface glycoprotein G

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