SMTL ID : 5wnb.2 (1 other biounit)

Structure of antibody 3D3 bound to the linear epitope of RSV G

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: E.30, N.74, D.77 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.77, H2O.1 ZN.2: 2 residues within 4Å: Chain A: D.106, H.108 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.106, A:H.108 ZN.3: 4 residues within 4Å: Chain A: H.175, T.194 Chain B: N.136, N.137 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.175, H2O.2 ZN.4: 3 residues within 4Å: Chain B: H.32, N.92 Ligands: ACY.6 3 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: B:H.32, H2O.2, ACY.6 ZN.5: 1 residues within 4Å: Chain B: E.17 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.17 ZN.7: 2 residues within 4Å: Chain C: H.3, E.5 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.3, C:E.5, C:E.5, H2O.2

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.6: 4 residues within 4Å: Chain B: H.32 Chain C: F.4, E.5 Ligands: ZN.4 2 PLIP interactions: 2 interactions with chain B Water bridges: B:S.30 Salt bridges: B:H.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fedechkin, S.O. et al., Structures of respiratory syncytial virus G antigen bound to broadly neutralizing antibodies. Sci Immunol (2018)

Release Date

2018-03-14

Peptides

mAb 3D3 Fab heavy chain: A
mAb 3D3 Fab light chain: B
Major surface glycoprotein G: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
M

C
A

mAb 3D3 Fab heavy chain

mAb 3D3 Fab light chain

Major surface glycoprotein G

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