SMTL ID : 5wni.2 (1 other biounit)

Crystal structure of murine receptor-interacting protein kinase 4 (Ripk4) D143N in complex with ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: N.148, D.161 Ligands: ATP.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.161 MG.4: 3 residues within 4Å: Chain B: N.148, D.161 Ligands: ATP.6 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.161

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: R.251, P.252, R.253, A.254 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain B: R.251, P.252, R.253, A.254 Ligand excluded by PLIP

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 17 residues within 4Å: Chain A: V.28, G.29, V.36, A.49, K.51, E.69, L.82, M.96, E.97, Y.98, M.99, S.103, A.147, N.148, L.150, D.161 Ligands: MG.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.97, A:M.99, A:S.103, A:D.161 Water bridges: A:S.103 Salt bridges: A:K.51, A:K.51, A:K.51 ATP.6: 17 residues within 4Å: Chain B: V.28, G.29, V.36, A.49, K.51, E.69, L.82, M.96, E.97, Y.98, M.99, S.103, A.147, N.148, L.150, D.161 Ligands: MG.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:E.97, B:M.99, B:S.103, B:D.161 Water bridges: B:S.103 Salt bridges: B:K.51, B:K.51, B:K.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.S. et al., Crystal Structure of Ripk4 Reveals Dimerization-Dependent Kinase Activity. Structure (2018)

Release Date

2018-05-09

Peptides

Receptor-interacting serine/threonine-protein kinase 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Receptor-interacting serine/threonine-protein kinase 4

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