SMTL ID : 5wnm.2 (1 other biounit)

Crystal structure of murine receptor-interacting protein 4 (Ripk4) D143N bound to tozasertib (VX-680)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: R.251, P.252, R.253, A.254 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain B: R.251, P.252, R.253, A.254 Ligand excluded by PLIP

2 x VX6: CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE(Non-covalent)

VX6.2: 17 residues within 4Å: Chain A: V.28, V.36, A.49, K.51, E.69, L.82, M.96, E.97, Y.98, M.99, E.100, T.101, G.102, A.147, L.150, S.160, D.161 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.36, A:K.51, A:L.82, A:Y.98, A:L.150, A:L.150, A:D.161 Hydrogen bonds: A:E.97, A:M.99, A:M.99, A:S.160, A:S.160 VX6.4: 17 residues within 4Å: Chain B: V.28, V.36, A.49, K.51, E.69, L.82, M.96, E.97, Y.98, M.99, E.100, T.101, G.102, A.147, L.150, S.160, D.161 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:V.36, B:K.51, B:L.82, B:Y.98, B:L.150, B:L.150, B:D.161 Hydrogen bonds: B:E.97, B:M.99, B:M.99, B:S.160, B:S.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.S. et al., Crystal Structure of Ripk4 Reveals Dimerization-Dependent Kinase Activity. Structure (2018)

Release Date

2018-05-09

Peptides

Receptor-interacting serine/threonine-protein kinase 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Receptor-interacting serine/threonine-protein kinase 4

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