SMTL ID : 5wq6.1 (3 other biounits)

Crystal Structure of hMNDA-PYD with MBP tag

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 15 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:E.154, A:Y.156

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Y.177, M.331, P.332, N.333 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.177, A:N.333, A:N.333 Water bridges: A:N.333 EDO.3: 7 residues within 4Å: Chain A: N.13, P.41, D.42, K.43, L.44, E.45, W.63 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.41, A:L.44, A:E.45 Water bridges: A:G.14, A:K.43, A:E.45 EDO.4: 5 residues within 4Å: Chain A: I.200, K.201, A.351, A.352, G.354 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, T.C. et al., Design of an expression system to enhance MBP-mediated crystallization. Sci Rep (2017)

Release Date

2017-02-15

Peptides

MBP tagged hMNDA-PYD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MBP tagged hMNDA-PYD

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