SMTL ID : 5wt1.2 (1 other biounit)

Pyrococcus abyssi methyltransferase PaTrm5a bound by SAH and cognate tRNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: L.131, Y.132, R.133, F.165, M.170, R.174, F.191, A.192, G.193, P.196, Y.197, E.213, I.214, G.242, D.243, V.244, P.260, P.262 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.165 Hydrogen bonds: A:Y.132, A:F.191, A:I.214, A:D.243, A:V.244 Water bridges: A:R.174, A:R.174 Salt bridges: A:R.174 pi-Stacking: A:F.191, A:F.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, C. et al., Structural insight into the methyltransfer mechanism of the bifunctional Trm5. Sci Adv (2017)

Release Date

2017-12-13

Peptides

tRNA (guanine(37)-N1)-methyltransferase Trm5a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

tRNA (guanine(37)-N1)-methyltransferase Trm5a

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