- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 8 residues within 4Å:- Chain A: N.48, D.51
- Chain E: N.48, D.51
- Chain I: N.48, D.51
- Ligands: MG.14, MG.26
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain E, 1 interactions with chain I- Metal complexes: A:D.51, E:D.51, I:D.51
MG.7: 6 residues within 4Å:- Chain B: N.48, D.51
- Chain C: N.48, D.51
- Chain L: N.48, D.51
3 PLIP interactions:1 interactions with chain C, 1 interactions with chain L, 1 interactions with chain B- Metal complexes: C:D.51, L:D.51, B:D.51
MG.14: 8 residues within 4Å:- Chain A: N.48, D.51
- Chain E: N.48, D.51
- Chain I: N.48, D.51
- Ligands: MG.2, MG.26
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain E, 1 interactions with chain I- Metal complexes: A:D.51, E:D.51, I:D.51
MG.19: 6 residues within 4Å:- Chain D: N.48, D.51
- Chain F: N.48, D.51
- Chain G: N.48, D.51
3 PLIP interactions:1 interactions with chain G, 1 interactions with chain D, 1 interactions with chain F- Metal complexes: G:D.51, D:D.51, F:D.51
MG.26: 8 residues within 4Å:- Chain A: N.48, D.51
- Chain E: N.48, D.51
- Chain I: N.48, D.51
- Ligands: MG.2, MG.14
3 PLIP interactions:1 interactions with chain E, 1 interactions with chain I, 1 interactions with chain A- Metal complexes: E:D.51, I:D.51, A:D.51
MG.31: 6 residues within 4Å:- Chain H: N.48, D.51
- Chain J: N.48, D.51
- Chain K: N.48, D.51
3 PLIP interactions:1 interactions with chain J, 1 interactions with chain H, 1 interactions with chain K- Metal complexes: J:D.51, H:D.51, K:D.51
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 8 residues within 4Å:- Chain A: R.50, L.54
- Chain E: R.50, L.54
- Chain I: R.50, L.54
- Ligands: CL.15, CL.27
Ligand excluded by PLIPCL.8: 6 residues within 4Å:- Chain B: R.50, L.54
- Chain C: R.50, L.54
- Chain L: R.50, L.54
Ligand excluded by PLIPCL.15: 8 residues within 4Å:- Chain A: R.50, L.54
- Chain E: R.50, L.54
- Chain I: R.50, L.54
- Ligands: CL.3, CL.27
Ligand excluded by PLIPCL.20: 6 residues within 4Å:- Chain D: R.50, L.54
- Chain F: R.50, L.54
- Chain G: R.50, L.54
Ligand excluded by PLIPCL.27: 8 residues within 4Å:- Chain A: R.50, L.54
- Chain E: R.50, L.54
- Chain I: R.50, L.54
- Ligands: CL.3, CL.15
Ligand excluded by PLIPCL.32: 6 residues within 4Å:- Chain H: R.50, L.54
- Chain J: R.50, L.54
- Chain K: R.50, L.54
Ligand excluded by PLIP- 12 x FE2: FE (II) ION(Non-functional Binders)(Non-covalent)
FE2.5: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)FE2.6: 1 residues within 4Å:- Chain B: D.138
No protein-ligand interaction detected (PLIP)FE2.11: 2 residues within 4Å:- Ligands: FE2.23, FE2.35
No protein-ligand interaction detected (PLIP)FE2.12: 2 residues within 4Å:- Ligands: FE2.24, FE2.36
No protein-ligand interaction detected (PLIP)FE2.17: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)FE2.18: 1 residues within 4Å:- Chain F: D.138
No protein-ligand interaction detected (PLIP)FE2.23: 2 residues within 4Å:- Ligands: FE2.11, FE2.35
No protein-ligand interaction detected (PLIP)FE2.24: 2 residues within 4Å:- Ligands: FE2.12, FE2.36
No protein-ligand interaction detected (PLIP)FE2.29: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)FE2.30: 1 residues within 4Å:- Chain J: D.138
No protein-ligand interaction detected (PLIP)FE2.35: 2 residues within 4Å:- Ligands: FE2.11, FE2.23
No protein-ligand interaction detected (PLIP)FE2.36: 2 residues within 4Å:- Ligands: FE2.12, FE2.24
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Williams, S.M. et al., Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis. Metallomics (2017)
- Release Date
- 2017-08-09
- Peptides
- Putative starvation-induced DNA protecting protein/Ferritin and Dps: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 12 x FE2: FE (II) ION(Non-functional Binders)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Williams, S.M. et al., Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis. Metallomics (2017)
- Release Date
- 2017-08-09
- Peptides
- Putative starvation-induced DNA protecting protein/Ferritin and Dps: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
D