SMTL ID : 5wxp.1

Crystal structure of uPA in complex with upain-2-3-W3A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x CYS- SER- ALA- 7XC: upain-2-3-W3A peptide(Non-covalent)

CYS-SER-ALA-7XC.1: 22 residues within 4Å: Chain A: H.46, L.92, H.94, D.192, S.193, C.194, Q.195, G.196, D.197, S.198, V.216, S.217, W.218, G.219, R.220, G.221, C.222, K.227, P.228, G.229 Ligands: ALA.2, CYS.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.216 Hydrogen bonds: A:L.92, A:S.193, A:G.196, A:D.197, A:S.198, A:S.198, A:G.219, A:R.220 Water bridges: A:D.192, A:S.193, A:G.221 Salt bridges: A:D.192

1 x ALA: ALANINE(Non-covalent)

ALA.2: 6 residues within 4Å: Chain A: H.46, Y.87, H.94 Ligands: CYS-SER-ALA-7XC.1, CYS-SER-ALA-7XC.1, CYS.3 No protein-ligand interaction detected (PLIP)

1 x CYS: CYSTEINE(Non-covalent)

CYS.3: 3 residues within 4Å: Chain A: A.89 Ligands: CYS-SER-ALA-7XC.1, ALA.2 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, L. et al., Cleavage of peptidic inhibitors by target protease is caused by peptide conformational transition. Biochim. Biophys. Acta (2018)

Release Date

2018-07-11

Peptides

Urokinase-type plasminogen activator chain B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
U

Urokinase-type plasminogen activator chain B

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