SMTL ID : 5x4n.1

Crystal structure of the BCL6 BTB domain in complex with Compound 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x 7ZL: 5-chloro-N4-phenylpyrimidine-2,4-diamine(Non-covalent)

7ZL.1: 3 residues within 4Å: Chain A: N.33, R.36, L.37 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.36 Water bridges: A:N.33, A:N.33

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: H.26, D.29, V.30, N.33 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.26, A:N.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kamada, Y. et al., Discovery of a B-Cell Lymphoma 6 Protein-Protein Interaction Inhibitor by a Biophysics-Driven Fragment-Based Approach. J. Med. Chem. (2017)

Release Date

2017-05-24

Peptides

B-cell lymphoma 6 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B-cell lymphoma 6 protein

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